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signals
0.10.0
Reference
Articles
Allele Specific Copy Number Inference in scRNAseq
Allele Specific Copy Number Inference
Beta-Binomial model for signals
Basic scDNAseq analysis
Changelog
Changelog
signals 0.10.0
add chr string check
remove acrocentric chromosomes in arm consensus
minor changes to heatmap and plotting
signals 0.9.1
Update docker to install suggests packages
signals 0.9.0
Fix phasing issue that happens when the cluster identified to phase relative to has a diploid region
signals 0.8.0
Add option to mask bins during inference
signals 0.7.6
Fix bug in plot_clusters_used_for_phasing
signals 0.7.5
Fixed r cmd check
signals 0.7.4
signals 0.7.3
signals 0.7.2
release for zenodo
signals 0.7.1
signals 0.7.0
change name to signals
multiple updates to plotting
rewrite of scRNAseq
signals 0.6.2
fix missing argument
signals 0.6.1
changed colours
fill in missing bins
improved documentation about inputs
signals 0.6.0
add option to remove noisy cells from phasing
signals 0.5.5
update plotting and clustering
signals 0.5.4
update docker
signals 0.5.3
some small updates to plotting and default params
signals 0.5.2
update to vignette and plotting
signals 0.5.1
updated default parameters
signals 0.5.0
update ascn inference
signals 0.4.3
filtering utility function
signals 0.4.2
fix bug with filtering
signals 0.4.1
Fix bug in HMM when total copy number = 0
Add function to filter hscn object
signals 0.4.0
Add option to filter haplotypes
Added Dockerfile and github actions to push to Dockerhub
Added QC metadata table to output
signals 0.3.0
Version associated with preprint
some fixes to plotting
signals 0.2.1
updates to heatmap plotting
signals 0.2.0
signals 0.1.0
Added a
NEWS.md
file to track changes to the package.
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