All functions

add_gene_locations_to_seurat()

Add gene genomic location to seurat object

callAlleleSpecificCN()

Call allele specific copy number in single cell datasets

callAlleleSpecificCNfromHSCN()

Call allele specific copy number in single cell datasets

callHaplotypeSpecificCN()

Call haplotype specific copy number in single cell datasets

coord_to_arm()

Genomic coordinate to chromosome arm

getBins()

Make fixed-width bins

plotBAFperstate()

Plot BAF distributions per allele specific state

plotCNprofile()

Plot a single cell copy number profile

plotCNprofileBAF()

Plot a single cell allele specific copy number profile

plotHeatmap()

Heatmap plot

plot_clusters_used_for_phasing()

Plot clusters used for phasing

rephasebins()

Rephase haplotype copy number

scale_color_scCN()

Colour scale constructor for scCN (single cell Copy Number) colors

scale_fill_scCN()

Fill scale constructor for scCN (single cell Copy Number) colors