Haplotype block allele counts for DLP+ cells

Raw (unphased) allele counts per haplotype block per cell for the same cells as CNbins. Input to format_haplotypes_dlp() and then callHaplotypeSpecificCN().

haplotypes

Format

A data frame with 13,268,159 rows and 7 columns:

cell_id

cell identifier

chr, start, end

haplotype block position

allele_id

0 or 1, distinguishing the two alleles

hap_label

haplotype block identifier, consistent across cells

readcount

reads supporting this allele in this cell