Haplotype allele counts for scRNA cells

Per-cell allele counts at phased SNP positions for the scRNA-seq data, matching countsmatrix. Input to the RNA copy number pipeline.

haplotypes_rna

Format

A data frame with 1,049,775 rows and 10 columns:

cell_id

cell identifier

chr, position

SNP position

ref, alt

reference and alternate base

hap_label

haplotype block identifier

allele0, allele1

counts for each phased allele

patient, sample

sample metadata